recipe peaks2utr

A robust, parallelized Python CLI for annotating three_prime_UTR

Homepage:

https://github.com/haessar/peaks2utr

License:

GPL3 / GPL-3.0-or-later

Recipe:

/peaks2utr/meta.yaml

Links:

doi: 10.1093/bioinformatics/btad112

package peaks2utr

versions:

1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.0-0

depends asgiref:

depends gffutils:

0.10.1

depends importlib-resources:

depends macs2:

2.2.9.1

depends numpy:

>=1.21.4

depends psutil:

depends pybedtools:

depends pysam:

depends python:

>=3.8,<3.12

depends requests:

depends tqdm:

depends typing-extensions:

depends zipp:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install peaks2utr

and update with::

   mamba update peaks2utr

To create a new environment, run:

mamba create --name myenvname peaks2utr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/peaks2utr:<tag>

(see `peaks2utr/tags`_ for valid values for ``<tag>``)

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