recipe peglit

Automatically identifies non-interfering nucleotide linkers between a pegRNA and 3' motif



BSD / BSD-3-Clause



package peglit

(downloads) docker_peglit



depends levenshtein:

depends matplotlib-base:

depends pandas:

depends python:


depends scikit-learn:

depends scipy:

depends tqdm:

depends viennarna:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install peglit

and update with::

   mamba update peglit

To create a new environment, run:

mamba create --name myenvname peglit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `peglit/tags`_ for valid values for ``<tag>``)

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