recipe perl-fastx-abi

FASTX::Abi - Read Sanger trace file (.ab1 chromatograms) in FASTQ format. For traces called with hetero option, the ambiguities will be split into two sequences to allow usage from NGS tools that usually do not understand IUPAC ambiguities.

Homepage

https://github.com/telatin/FASTX-Abi

Documentation

https://metacpan.org/pod/FASTX::Abi

License

MIT

Recipe

/perl-fastx-abi/meta.yaml

This module reads a Sanger trace (chromatogram). If the chromatogram was saved in "hetero" mode, that is allowing IUPAC ambiguities in the basecalling, the module will return two (unphased) sequences in standard "ACGT" alphabet.

package perl-fastx-abi

(downloads) docker_perl-fastx-abi

Versions

0.11-00.08-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install perl-fastx-abi

and update with:

conda update perl-fastx-abi

or use the docker container:

docker pull quay.io/biocontainers/perl-fastx-abi:<tag>

(see perl-fastx-abi/tags for valid values for <tag>)