recipe perl-obogaf-parser

a perl5 module to handle obo and gaf file

Homepage

http://metacpan.org/pod/obogaf::parser

Documentation

https://obogaf-parser.readthedocs.io

Developer docs

https://github.com/marconotaro/obogaf-parser

License

perl_5

Recipe

/perl-obogaf-parser/meta.yaml

[![Documentation Status](https://readthedocs.org/projects/obogaf-parser/badge/?version=latest)](https://obogaf-parser.readthedocs.io/en/latest/?badge=latest)

obogaf-parser is a perl5 module specifically designed to handle GO and HPO obo file and their gene annotation file (gaf). However, obogaf-parser can be safely used to parse any obo file listed in OBO foundry website and any gaf file structured as those shown in GOA and HPO website (i.e. a csv file using tab as separator).

package perl-obogaf-parser

(downloads) docker_perl-obogaf-parser

Versions

1.373-0, 1.272-0, 1.271-0, 1.016-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install perl-obogaf-parser

and update with:

conda update perl-obogaf-parser

or use the docker container:

docker pull quay.io/biocontainers/perl-obogaf-parser:<tag>

(see perl-obogaf-parser/tags for valid values for <tag>)