recipe perl-sanger-cgp-allelecount

Support code for NGS copy number algorithm

Homepage

https://github.com/cancerit/alleleCount

License

GPLv3

Recipe

/perl-sanger-cgp-allelecount/meta.yaml

package perl-sanger-cgp-allelecount

Versions

4.1.0-0,  4.0.0-2,  4.0.0-1,  4.0.0-0,  2.1.2-3,  2.1.2-2,  2.1.2-1

Depends

• libgcc-ng >=7.3.0

• perl >=5.26.2,<5.26.3.0a0

• perl-bio-samtools

• perl-bioperl

• perl-sanger-cgp-vcf

Required By

• perl-sanger-cgp-battenberg

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install perl-sanger-cgp-allelecount

and update with:

conda update perl-sanger-cgp-allelecount

or use the docker container:

docker pull quay.io/biocontainers/perl-sanger-cgp-allelecount:<tag>

(see perl-sanger-cgp-allelecount/tags for valid values for <tag>)

Link to this page

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