recipe perl-sanger-cgp-battenberg

detect subclonality and copy number in matched NGS data

Homepage

https://github.com/cancerit/cgpBattenberg

License

GPLv3

Recipe

/perl-sanger-cgp-battenberg/meta.yaml

package perl-sanger-cgp-battenberg

Versions

1.4.1-5,  1.4.1-4,  1.4.1-3,  1.4.1-2,  1.4.1-1

Depends

• cancerit-allelecount

• impute2

• libgcc-ng >=7.5.0

• perl >=5.26.2,<5.26.3.0a0

• perl-file-sharedir

• perl-file-sharedir-install

• perl-pcap

• perl-sanger-cgp-allelecount

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install perl-sanger-cgp-battenberg

and update with:

conda update perl-sanger-cgp-battenberg

or use the docker container:

docker pull quay.io/biocontainers/perl-sanger-cgp-battenberg:<tag>

(see perl-sanger-cgp-battenberg/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/perl-sanger-cgp-battenberg/README.html)