recipe pfam_scan

pfam_scan.pl is a Perl script calling HMMER v3 to search a FASTA file against a library of Pfam HMMs.

Homepage

http://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/

License

GPL (>= 2)

Recipe

/pfam_scan/meta.yaml

package pfam_scan

Versions

1.6-2, 1.6-1, 1.6-0

Depends

• hmmer >=3.0

• perl >=5.26.2,<5.27.0a0

• perl-bioperl >=1.4

• perl-ipc-run

• perl-moose

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pfam_scan

and update with:

conda update pfam_scan

or use the docker container:

docker pull quay.io/biocontainers/pfam_scan:<tag>

(see pfam_scan/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pfam_scan/README.html)