recipe phanotate

Phanotate gene caller for phages

Homepage:

https://github.com/deprekate/PHANOTATE

Documentation:

https://github.com/deprekate/PHANOTATE/blob/master/README.md

License:

GPL3 / GPL-3.0-only

Recipe:

/phanotate/meta.yaml

Links:

doi: 10.1093/bioinformatics

package phanotate

(downloads) docker_phanotate

versions:

1.5.1-11.5.1-01.5.0-21.5.0-11.5.0-0

depends backports.tempfile:

depends fastpath:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends matplotlib-base:

depends python_abi:

3.10.* *_cp310

depends scipy:

depends seaborn:

depends setuptools:

depends statsmodels:

depends textwrap3:

depends trnascan-se:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phanotate

and update with::

   mamba update phanotate

To create a new environment, run:

mamba create --name myenvname phanotate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phanotate:<tag>

(see `phanotate/tags`_ for valid values for ``<tag>``)

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