recipe phantompeakqualtools

This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.

Homepage:

https://github.com/kundajelab/phantompeakqualtools

License:

BSD-3-Clause

Recipe:

/phantompeakqualtools/meta.yaml

Links:

doi: 10.1101/gr.136184.111, doi: 10.1038/nbt.1508

package phantompeakqualtools

Versions:

1.2.2-1,  1.2.2-0,  1.2.1.1-0,  1.2.1-0,  1.2-1,  1.2-0

Depends:

• bioconductor-rsamtools

• boost

• gawk

• r-base >=3.1

• r-bitops

• r-catools

• r-snow

• r-snowfall

• r-spp >=1.13

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install phantompeakqualtools

and update with:

conda update phantompeakqualtools

or use the docker container:

docker pull quay.io/biocontainers/phantompeakqualtools:<tag>

(see phantompeakqualtools/tags for valid values for <tag>)

Download stats

Link to this page

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