recipe pharokka

Fast Phage Annotation Program

Homepage:

https://github.com/gbouras13/pharokka

Documentation:

https://pharokka.readthedocs.io

License:

MIT

Recipe:

/pharokka/meta.yaml

package pharokka

Versions:

1.3.2-0,  1.3.1-0,  1.3.0-1,  1.3.0-0,  1.2.1-0,  1.2.0-0,  1.1.0-0,  1.0.1-0,  1.0.0-0, 

1.3.2-0,  1.3.1-0,  1.3.0-1,  1.3.0-0,  1.2.1-0,  1.2.0-0,  1.1.0-0,  1.0.1-0,  1.0.0-0,  0.1.11-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0

Depends:

• aragorn >=1.2.41

• bcbio-gff

• biopython >=1.78,<1.81

• curl

• mash >=2.2

• minced >=0.4.2

• mmseqs2 13.45111

• phanotate >=1.5.0

• pycirclize >=0.3.1

• pyrodigal >=2.0.1

• tar

• trnascan-se >=2.0.9

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pharokka

and update with:

conda update pharokka

or use the docker container:

docker pull quay.io/biocontainers/pharokka:<tag>

(see pharokka/tags for valid values for <tag>)

Download stats

Link to this page

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