recipe pheniqs

Pheniqs is a flexible generic barcode classifier for high-throughput next-gen sequencing written in multi threaded C++11. It caters to a wide variety of experimental designs by addressing multiple combinatorial index tags in arbitrary locations along reads. Pheniqs implements a noise and quality aware probabilistic classifier with improved accuracy over standard edit distance methods and reports classification quality in standard SAM auxiliary tags. Please not configuation syntax has slightly changed for 2.1.x version.

Homepage

http://biosails.github.io/pheniqs

Developer docs

https://github.com/biosails/pheniqs

License

GPL3

Recipe

/pheniqs/meta.yaml

package pheniqs

(downloads) docker_pheniqs

Versions

2.1.0-12.1.0-02.0.6-32.0.6-22.0.6-12.0.6-02.0.3-12.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pheniqs

and update with:

conda update pheniqs

or use the docker container:

docker pull quay.io/biocontainers/pheniqs:<tag>

(see pheniqs/tags for valid values for <tag>)

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