recipe phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages.

Homepage

https://phigaro.readthedocs.io/

License

MIT / MIT

Recipe

/phigaro/meta.yaml

Phigaro is a standalone command-line application that is able to detect prophage regions taking raw genome and metagenome assemblies as an input. It also produces dynamic annotated “prophage genome maps” and marks possible transposon insertion spots inside prophages. It is applicable for mining prophage regions from large metagenomic datasets.

package phigaro

Versions

2.3.0-1,  2.3.0-0,  2.2.6-0

Depends

• argparse

• beautifulsoup4 >=4.4.0

• biopython

• bs4

• future

• hmmer

• lxml

• numpy

• pandas >=0.23.4

• plotly

• prodigal

• python >=3.6

• pyyaml >=5.1

• sh

• six >=1.7.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install phigaro

and update with:

conda update phigaro

or use the docker container:

docker pull quay.io/biocontainers/phigaro:<tag>

(see phigaro/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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