recipe phispy

Prophage finder using multiple metrics

Homepage

https://github.com/linsalrob/PhiSpy

Documentation

https://github.com/linsalrob/PhiSpy/blob/master/README.md

Developer docs

https://github.com/linsalrob/PhiSpy/

License

MIT / MIT

Recipe

/phispy/meta.yaml

Links

doi: 10.5281/zenodo.3475717

package phispy

Versions

4.2.21-1,  4.2.21-0,  4.2.19-0,  4.2.17-0,  4.2.12-0,  4.2.6-1,  4.2.6-0,  4.1.22-0,  4.1.20-0, 

4.2.21-1,  4.2.21-0,  4.2.19-0,  4.2.17-0,  4.2.12-0,  4.2.6-1,  4.2.6-0,  4.1.22-0,  4.1.20-0,  4.1.17-0,  4.1.16-0,  4.1.14-0,  4.1.7-0,  4.1.0-0,  4.0.3-0,  4.0.0-0,  3.7.8-0

Depends

• bcbio-gff

• biopython

• hmmer

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• numpy

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• scikit-learn

Required By

• mgca

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install phispy

and update with:

conda update phispy

or use the docker container:

docker pull quay.io/biocontainers/phispy:<tag>

(see phispy/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/phispy/README.html)