recipe phispy

Prophage finder using multiple metrics

Homepage:

https://github.com/linsalrob/PhiSpy

Documentation:

https://github.com/linsalrob/PhiSpy/blob/master/README.md

Developer docs:

https://github.com/linsalrob/PhiSpy/

License:

MIT / MIT

Recipe:

/phispy/meta.yaml

Links:

doi: 10.5281/zenodo.3475717

package phispy

(downloads) docker_phispy

versions:
4.2.21-7,  4.2.21-6,  4.2.21-5,  4.2.21-4,  4.2.21-3,  4.2.21-2,  4.2.21-1,  4.2.21-0,  4.2.19-0, 

4.2.21-7,  4.2.21-6,  4.2.21-5,  4.2.21-4,  4.2.21-3,  4.2.21-2,  4.2.21-1,  4.2.21-0,  4.2.19-0,  4.2.17-0,  4.2.12-0,  4.2.6-1,  4.2.6-0,  4.1.22-0,  4.1.20-0,  4.1.17-0,  4.1.16-0,  4.1.14-0,  4.1.7-0,  4.1.0-0,  4.0.3-0,  4.0.0-0,  3.7.8-0

depends bcbio-gff:

depends biopython:

<=1.81

depends hmmer:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends numpy:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends scikit-learn:

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phispy

and update with::

   mamba update phispy

To create a new environment, run:

mamba create --name myenvname phispy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phispy:<tag>

(see `phispy/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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