recipe phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

Homepage

https://github.com/biobakery/phylophlan

License

MIT / MIT License

Recipe

/phylophlan/meta.yaml

PhyloPhlAn 3.0 is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes. PhyloPhlAn 3.0 is an accurate, rapid, and easy-to-use method for large-scale microbial genome characterization and phylogenetic analysis at multiple levels of resolution. PhyloPhlAn 3.0 can assign both genomes and metagenome-assembled genomes (MAGs) to species-level genome bins (SGBs). PhyloPhlAn 3.0 can reconstruct strain-level phylogenies using clade-specific maximally informative phylogenetic markers, and can also scale to very-large phylogenies comprising >17,000 microbial species.

package phylophlan

(downloads) docker_phylophlan

Versions

3.0.1-03.0-73.0-63.0-53.0-43.0-23.0-13.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install phylophlan

and update with:

conda update phylophlan

or use the docker container:

docker pull quay.io/biocontainers/phylophlan:<tag>

(see phylophlan/tags for valid values for <tag>)