recipe picrust2

PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

Homepage

https://github.com/picrust/picrust2

License

GNU General Public License v3.0

Recipe

/picrust2/meta.yaml

package picrust2

Versions

2.3.0_b-0, 2.2.0_b-0, 2.1.4_b-0, 2.1.3_b-0, 2.1.2_b-0, 2.1.1_b-0, 2.1.0_b-0, 2.0.3_b-0

Depends

• biom-format >=2.1.7

• epa-ng 0.3.6.*

• gappa 0.5.1.*

• glpk 4.65.*

• h5py >=2.9.0

• hmmer >=3.1b2,<=3.2.1

• joblib >=0.13.1

• numpy >=1.16.2

• pandas >=0.24.2,<=0.25.2

• pytest >=4.4.1

• pytest-cov >=2.6.1

• python >=3.5,<3.7

• r-base >=3.5.1

• r-castor 1.5.0.*

• scipy >=1.2.1

• wget

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install picrust2

and update with:

conda update picrust2

or use the docker container:

docker pull quay.io/biocontainers/picrust2:<tag>

(see picrust2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/picrust2/README.html)