Package Recipe 'picrust2'

recipe picrust2

PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

Homepage: https://github.com/picrust/picrust2
License: GNU General Public License v3.0
Recipe: /picrust2/meta.yaml

package picrust2¶

Versions

2.5.0-0, 2.4.2-0, 2.4.1-0, 2.4.0-0, 2.3.0_b-0, 2.2.0_b-0, 2.1.4_b-0, 2.1.3_b-0, 2.1.2_b-0,

2.5.0-0, 2.4.2-0, 2.4.1-0, 2.4.0-0, 2.3.0_b-0, 2.2.0_b-0, 2.1.4_b-0, 2.1.3_b-0, 2.1.2_b-0, 2.1.1_b-0, 2.1.0_b-0, 2.0.3_b-0

Depends

biom-format >=2.1.10
epa-ng 0.3.8.*
gappa 0.8.0.*
glpk 4.65.*
h5py >=3.1.0
hmmer >=3.1b2,<=3.2.1
joblib >=1.0.1
numpy >=1.19.5
pandas >=1.1.5
pytest >=4.4.1
pytest-cov >=2.6.1
python >=3.5,<3.9
r-base >=3.5.1
r-castor 1.7.2.*
scipy >=1.2.1
sepp 4.3.10.*
wget

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install picrust2

and update with:

conda update picrust2

or use the docker container:

docker pull quay.io/biocontainers/picrust2:<tag>

(see picrust2/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/picrust2/README.html)