- recipe pigpen
A package to quantify RNA localization using OINC-seq data
- Homepage:
- License:
MIT / MIT
- Recipe:
- Links:
- package pigpen¶
- versions:
0.0.6-0,0.0.5-0,0.0.4-1,0.0.4-0- depends bamtools:
>=2.5.2- depends bcftools:
>=1.15- depends gffutils:
>=0.11.0- depends libgcc:
>=13- depends libstdcxx:
>=13- depends numpy:
>=1.21- depends pandas:
>=1.3.5- depends pybedtools:
>=0.9.0- depends pysam:
>=0.19- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends r-base:
>=4.1- depends rpy2:
>=3.4.5- depends salmon:
>=1.9.0- depends samtools:
>=1.15- depends star:
>=2.7.10- depends statsmodels:
>=0.13.2- depends umi_tools:
>=1.1.0- depends varscan:
>=2.4.4- requirements:
- additional platforms:
linux-aarch64
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install pigpen and update with:: mamba update pigpen
To create a new environment, run:
mamba create --name myenvname pigpen
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/pigpen:<tag> (see `pigpen/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/pigpen/README.html)
