pindel

downloads

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data

Home http://gmt.genome.wustl.edu/packages/pindel/index.html
Versions 0.2.5a7, 0.2.5b8
License GPLv3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pindel

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pindel

and update with:

conda update pindel

docker

A Docker container is available at https://quay.io/repository/biocontainers/pindel.