recipe piranha-polio

Poliovirus Investigation Resource Automating Nanopore Haplotype Analysis

Homepage:

https://github.com/polio-nanopore/piranha

License:

GPL-3.0-only

Recipe:

/piranha-polio/meta.yaml

package piranha-polio

Versions:

1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-0

Depends:

• bcftools >=1.11

• biopython

• coreutils >=9.1

• mafft

• mako >=1.2

• medaka >=1.7.1

• minimap2 >=2.17

• pandas

• pysam

• python <3.10

• samtools >=1.11

• snakemake-minimal

• snipit

• tabix >=1.11

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install piranha-polio

and update with:

conda update piranha-polio

or use the docker container:

docker pull quay.io/biocontainers/piranha-polio:<tag>

(see piranha-polio/tags for valid values for <tag>)

Download stats

Link to this page

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