recipe plant_tribes_gene_family_aligner

Gene family aligner pipeline

Homepage:

https://github.com/dePamphilis/PlantTribes

License:

GNU General Public License v3 (GPLv3)

Recipe:

/plant_tribes_gene_family_aligner/meta.yaml

package plant_tribes_gene_family_aligner

(downloads) docker_plant_tribes_gene_family_aligner

versions:

1.0.4-1,  1.0.4-0,  1.0.3-0,  1.0.2-1,  1.0.2-0,  1.0.0-1,  1.0.0-0

depends mafft:

>=7,<8

depends pasta:

>=1.7.8

depends perl:

depends python:

<3

depends trimal:

>=1.4,<2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install plant_tribes_gene_family_aligner

and update with::

   mamba update plant_tribes_gene_family_aligner

To create a new environment, run:

mamba create --name myenvname plant_tribes_gene_family_aligner

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/plant_tribes_gene_family_aligner:<tag>

(see `plant_tribes_gene_family_aligner/tags`_ for valid values for ``<tag>``)

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Link to this page

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