recipe plassembler

Quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates

Homepage:

https://github.com/gbouras13/plassembler

License:

MIT

Recipe:

/plassembler/meta.yaml

package plassembler

Versions:

1.1.0-0,  1.0.0-1,  1.0.0-0,  0.1.5-0,  0.1.4-0,  0.1.3-0,  0.1.2-0

Depends:

• biopython >=1.76

• chopper >=0.5.0

• click >=8.0.0

• fastp >=0.18.0

• flye >=2.9

• loguru >=0.5.3

• mash >=2.2

• minimap2 >=2.11

• pandas >=1.4.2

• pysam >=0.16.0

• python >=3.8,<3.10

• pyyaml >=6.0

• raven-assembler >=1.8

• samtools >=0.15.0

• unicycler >=0.4.8

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install plassembler

and update with:

conda update plassembler

or use the docker container:

docker pull quay.io/biocontainers/plassembler:<tag>

(see plassembler/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/plassembler/README.html)