recipe plastid

plastid is a Python library for genomic analysis -- in particular, high-throughput sequencing data

Homepage

http://plastid.readthedocs.io/en/latest/

License

BSD 3-Clause

Recipe

/plastid/meta.yaml

package plastid

Versions

0.5.1-2,  0.5.1-1,  0.5.1-0,  0.4.8-5,  0.4.8-4,  0.4.8-1,  0.4.8-0,  0.4.7-1,  0.4.7-0

Depends

• biopython >=1.64,<1.78

• bowtie

• cython >=0.22.0

• fastx_toolkit

• libgcc-ng >=7.5.0

• matplotlib-base >=1.4.0

• numpy >=1.16.5,<2.0a0

• pandas >=0.17.0

• pysam >=0.16.0.1,<0.16.1.0a0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• scipy >=0.15.1

• termcolor

• twobitreader >=3.0.0

• zlib >=1.2.11,<1.3.0a0

Required By

• reparation_blast

• mqc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install plastid

and update with:

conda update plastid

or use the docker container:

docker pull quay.io/biocontainers/plastid:<tag>

(see plastid/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/plastid/README.html)