recipe pmga

Command-line version of PMGA (PubMLST Genome Annotator) for all Neisseria species and Haemophilus influenzae

Homepage:

https://github.com/CDCgov/BMGAP

License:

AGPL / AGPL-2.0

Recipe:

/pmga/meta.yaml

Links:

doi: 10.3389/fgene.2020.601870

package pmga

Versions:

3.0.2-0,  3.0.1-0

Depends:

• biopython >1.77

• blast

• executor

• mash 1.1.*

• pigz

• python >=3.7

• requests

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pmga

and update with:

conda update pmga

or use the docker container:

docker pull quay.io/biocontainers/pmga:<tag>

(see pmga/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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