recipe pneumocat

PneumoCaT (Pneumococcal Capsular Typing) uses a two-step step approach to assign capsular type to S.pneumoniae genomic data (Illumina)

Homepage

https://github.com/phe-bioinformatics/pneumocat

License

GPL / GPL-3.0

Recipe

/pneumocat/meta.yaml

package pneumocat

Versions

1.2-0, 1.1-0

Depends

• biopython

• bowtie2

• lxml

• numpy

• pysam

• python 2.7*

• pyyaml

• samtools ==0.1.19

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pneumocat

and update with:

conda update pneumocat

or use the docker container:

docker pull quay.io/biocontainers/pneumocat:<tag>

(see pneumocat/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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