recipe pneumocat

PneumoCaT (Pneumococcal Capsular Typing) uses a two-step step approach to assign capsular type to S.pneumoniae genomic data (Illumina)

Homepage:

https://github.com/phe-bioinformatics/pneumocat

License:

GPL / GPL-3.0

Recipe:

/pneumocat/meta.yaml

package pneumocat

Versions:

1.2.1-1,  1.2.1-0,  1.2-3,  1.2-2,  1.2-0,  1.1-0

Depends:

• biopython

• bowtie2

• lxml

• numpy

• pysam

• python <3

• pyyaml

• samtools >1.3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pneumocat

and update with:

conda update pneumocat

or use the docker container:

docker pull quay.io/biocontainers/pneumocat:<tag>

(see pneumocat/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pneumocat/README.html)