recipe pomoxis

Assembly, consensensus, and analysis tools by ONT research

Homepage:

https://github.com/nanoporetech/pomoxis

Documentation:

https://nanoporetech.github.io/pomoxis/index.html

License:

OTHER / Mozilla Public License 2.0

Recipe:

/pomoxis/meta.yaml

package pomoxis

Versions:

0.3.12-0,  0.3.11-0,  0.3.10-0,  0.3.9-0,  0.3.8-0,  0.3.7-0,  0.3.6-0,  0.3.5-1,  0.3.5-0, 

0.3.12-0,  0.3.11-0,  0.3.10-0,  0.3.9-0,  0.3.8-0,  0.3.7-0,  0.3.6-0,  0.3.5-1,  0.3.5-0,  0.3.4-0,  0.3.2-1,  0.3.2-0,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.5-0,  0.2.4-0,  0.2.3-0,  0.2.2-0

Depends:

• bcftools >=1.9

• bedtools >=2.29.0

• biopython >=1.63

• intervaltree >=3

• matplotlib-base >=3.2.1

• miniasm >=0.3_r179

• minimap2 >=2.17

• ncls >=0.0.65

• numpy >=1.16.1

• pandas >=0.24.2

• porechop

• pysam >=0.15.2

• python >=3.6

• racon >=1.3.1

• samtools >=1.9

• seqkit >=0.8.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pomoxis

and update with:

conda update pomoxis

or use the docker container:

docker pull quay.io/biocontainers/pomoxis:<tag>

(see pomoxis/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pomoxis/README.html)