recipe pore-c

Toolkit for processing Pore-C concatemers

Homepage:

https://github.com/nanoporetech/pore-c

License:

OTHER / Mozilla Public License 2.0

Recipe:

/pore-c/meta.yaml

package pore-c

Versions:

0.4.0-0,  0.3.0-0

Depends:

• biopython 1.77

• click >=7.0.0,<8.0

• cooler 0.8.*,>=0.8.5

• dask 2.*,>=2.0.0

• distributed 2.*,>=2.9.3

• intake

• intake-parquet

• ncls

• networkx 2.*,>=2.4.0

• numpy <1.20.0

• pairtools

• pandas >=1.0.5

• pyarrow 1.*,>=1.0.0

• pydantic 1.6.1

• pyranges 0.0.71

• pysam

• python

• streamz 0.*,>=0.5.2

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pore-c

and update with:

conda update pore-c

or use the docker container:

docker pull quay.io/biocontainers/pore-c:<tag>

(see pore-c/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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