recipe pridepy

Python Client library for PRIDE Rest API

Homepage:

https://github.com/PRIDE-Archive/pridepy

License:

APACHE / Apache-2.0

Recipe:

/pridepy/meta.yaml

pridepy is a Python client library that enables users to download and search proteomics data from the PRIDE database. It supports multiple download protocols including FTP, Aspera, Globus, and S3.

package pridepy

(downloads) docker_pridepy

versions:

0.0.12-0

depends boto3:

>=1.34.0,<2.0.0

depends botocore:

>=1.34.0,<2.0.0

depends click:

>=8.1.7,<9.0.0

depends httpx:

>=0.27.0,<0.28.0

depends python:

>=3.9

depends ratelimit:

>=2.2.1,<3.0.0

depends requests:

>=2.31.0,<3.0.0

depends tqdm:

>=4.66.1,<5.0.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pridepy

and update with::

   mamba update pridepy

To create a new environment, run:

mamba create --name myenvname pridepy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pridepy:<tag>

(see `pridepy/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pridepy/README.html)