recipe prokka

Rapid annotation of prokaryotic genomes

Homepage:

https://github.com/tseemann/prokka

License:

GPL / GPLv2

Recipe:

/prokka/meta.yaml

Links:

biotools: prokka, doi: 10.1093/bioinformatics/btu153, usegalaxy-eu: prokka

package prokka

Versions:

1.14.6-4,  1.14.6-3,  1.14.6-2,  1.14.6-1,  1.14.6-0,  1.14.5-1,  1.14.5-0,  1.14.0-1,  1.14.0-0, 

1.14.6-4,  1.14.6-3,  1.14.6-2,  1.14.6-1,  1.14.6-0,  1.14.5-1,  1.14.5-0,  1.14.0-1,  1.14.0-0,  1.13.7-0,  1.13.4-0,  1.13.3-0,  1.13-4,  1.13-3,  1.13-2,  1.13-1,  1.13-0,  1.12-4,  1.12-3,  1.12-2,  1.12-1,  1.12-0,  1.11-0

Depends:

• aragorn >=1.2

• barrnap >=0.7

• blast >=2.7.1

• hmmer >=3.1b2

• infernal >=1.1.2

• minced >=0.3

• parallel >=20180522

• perl >=5.32.1,<6.0a0 *_perl5

• perl-bioperl >=1.7.2

• perl-xml-simple

• prodigal >=2.6

• tbl2asn-forever >=25.7

Required By:

• asqcan

• metaprokka

• panaroo

• centreseq

• panacota

• marvel

• beav

• saspector

• taranis

• hybran

• pgcgap

• magcluster

• metawrap-mg

• hypro

• plasmidid

• smeg

• nullarbor

• gifrop

• metaclock

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install prokka

and update with:

conda update prokka

or use the docker container:

docker pull quay.io/biocontainers/prokka:<tag>

(see prokka/tags for valid values for <tag>)

Download stats

Link to this page

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