prophyle

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ProPhyle is a metagenomic classifier based on BWT-index and phylogenetic trees. Its indexing strategy uses bottom-up propagation of k-mers in the tree, assembling contigs at each node and matching using a standard full-text search.

Home https://github.com/karel-brinda/prophyle
Versions 0.1.0.29, 0.1.0.35, 0.1.0.38
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/prophyle

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install prophyle

and update with:

conda update prophyle

docker

A Docker container is available at https://quay.io/repository/biocontainers/prophyle.