recipe purge_dups

purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth.

Homepage:

https://github.com/dfguan/purge_dups

License:

MIT / MIT

Recipe:

/purge_dups/meta.yaml

package purge_dups

Versions:

1.2.6-1,  1.2.6-0,  1.2.5-2,  1.2.5-1,  1.2.5-0,  1.0.1-0

Depends:

• augustus

• blast

• busco

• kmc

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• matplotlib-base

• minimap2

• purge-dups-runner

• python >=3.9,<3.10.0a0

• python_abi 3.9.* *_cp39

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install purge_dups

and update with:

conda update purge_dups

or use the docker container:

docker pull quay.io/biocontainers/purge_dups:<tag>

(see purge_dups/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/purge_dups/README.html)