recipe pyamilyseq

PyamilySeq: A pangenome investigation tool

Homepage:

https://github.com/NickJD/PyamilySeq

License:

GPL-3.0-only

Recipe:

/pyamilyseq/meta.yaml

PyamilySeq - A tool to investigate gene-centric prokaryote pangenomes built with clustering methods such as CD-HIT, DIAMOND, BLAST or MMseqs2.

package pyamilyseq

(downloads) docker_pyamilyseq

versions:

1.3.2-0

depends python:

>=3.10

depends python-levenshtein:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pyamilyseq

and update with::

   mamba update pyamilyseq

To create a new environment, run:

mamba create --name myenvname pyamilyseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pyamilyseq:<tag>

(see `pyamilyseq/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyamilyseq/README.html)