recipe pyani-plus

Whole-genome classification of microbes using Average Nucleotide Identity and similar methods.

Homepage:

https://github.com/pyani-plus/pyani-plus

Documentation:

https://pyani-plus.github.io/pyani-plus-docs

License:

MIT / MIT

Recipe:

/pyani-plus/meta.yaml

Links:

doi: 10.5281/zenodo.15005805

package pyani-plus

versions:

0.0.1-0

depends blast:

depends fastani:

depends intervaltree:

depends matplotlib-base:

>=3.10.0

depends mummer:

3.23.*

depends networkx:

>=3.4.2

depends pandas:

depends python:

>=3.11

depends rich:

depends seaborn-base:

>=0.13.2

depends snakemake-executor-plugin-slurm:

depends snakemake-minimal:

>=8.24

depends sourmash:

depends sourmash_plugin_branchwater:

>=0.9.11

depends sqlalchemy:

>=2.0

depends typer:

>=0.12

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pyani-plus

and update with::

   mamba update pyani-plus

To create a new environment, run:

mamba create --name myenvname pyani-plus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pyani-plus:<tag>

(see `pyani-plus/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyani-plus/README.html)