recipe pychopper

A tool to identify, orient and rescue full length cDNA reads from nanopore data.

Homepage

https://github.com/nanoporetech/pychopper

License

MPL2

Recipe

/pychopper/meta.yaml

package pychopper

Versions

2.4.0-0,  2.3.1-1,  2.3.1-0,  2.3.0-0,  2.2.2-1,  2.2.2-0,  2.2.1-0,  2.2.0-1,  2.2.0-0, 

2.4.0-0,  2.3.1-1,  2.3.1-0,  2.3.0-0,  2.2.2-1,  2.2.2-0,  2.2.1-0,  2.2.0-1,  2.2.0-0,  2.1.0-0,  2.0.3-1,  2.0.3-0,  0.6.1-0,  0.5.0-0,  0.4.0-0

Depends

• hmmer >=3.2

• matplotlib-base

• pandas

• parasail-python

• python >=3

• python-edlib

• seaborn

• six

• tqdm

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pychopper

and update with:

conda update pychopper

or use the docker container:

docker pull quay.io/biocontainers/pychopper:<tag>

(see pychopper/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pychopper/README.html)