recipe pycoqc

PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data

Homepage:

https://github.com/a-slide/pycoQC

Documentation:

https://a-slide.github.io/pycoQC/

License:

GPL / GNU General Public v3 (GPLv3)

Recipe:

/pycoqc/meta.yaml

package pycoqc

Versions:

2.5.2-0,  2.5.0.23-0,  2.5.0.21-0,  2.5.0.3-0,  2.2.4-0,  2.2.3-2,  2.2.3-1,  1.0.alpha1-0

Depends:

• h5py 2.9.0.*

• jinja2 2.10.1.*

• numpy 1.17.1.*

• pandas 0.25.1.*

• plotly 4.1.0.*

• pysam 0.15.3.*

• python >=3.6

• scipy 1.3.1.*

• tqdm 4.35.0.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pycoqc

and update with:

conda update pycoqc

or use the docker container:

docker pull quay.io/biocontainers/pycoqc:<tag>

(see pycoqc/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pycoqc/README.html)