recipe pyensembl

Python interface to ensembl reference genome metadata

Homepage

https://github.com/openvax/pyensembl

License

Apache / Apache-2.0

Recipe

/pyensembl/meta.yaml

package pyensembl

Versions

1.8.7-0,  1.8.5-0,  1.8.4-1,  1.8.4-0,  1.8.3-0,  1.8.2-0,  1.8.0-0,  1.7.5-0,  1.7.4-0, 

1.8.7-0,  1.8.5-0,  1.8.4-1,  1.8.4-0,  1.8.3-0,  1.8.2-0,  1.8.0-0,  1.7.5-0,  1.7.4-0,  1.7.3-1,  1.7.3-0,  1.7.2-0,  1.2.6-2,  1.2.6-1,  1.2.6-0

Depends

• datacache >=0.4.19

• gtfparse >=0.0.3

• memoized-property >=1.0.2

• numpy >=1.7

• pandas >=0.15

• pylint >=1.4.4

• python

• python-dateutil >=2.5.0

• serializable

• six >=1.9.0

• tinytimer

• typechecks >=0.0.2

Required By

• agfusion

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pyensembl

and update with:

conda update pyensembl

or use the docker container:

docker pull quay.io/biocontainers/pyensembl:<tag>

(see pyensembl/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyensembl/README.html)