- recipe pyensembl
Python interface to ensembl reference genome metadata
- Homepage:
- License:
Apache / Apache-2.0
- Recipe:
- package pyensembl¶
- versions:
2.2.9-0,2.1.0-0,2.0.1-0,2.0.0-0,1.9.4-0,1.9.2-0,1.9.1-0,1.9.0-0,1.8.8-0,2.2.9-0,2.1.0-0,2.0.1-0,2.0.0-0,1.9.4-0,1.9.2-0,1.9.1-0,1.9.0-0,1.8.8-0,1.8.7-1,1.8.7-0,1.8.5-0,1.8.4-1,1.8.4-0,1.8.3-0,1.8.2-0,1.8.0-0,1.7.5-0,1.7.4-0,1.7.3-1,1.7.3-0,1.7.2-0,1.2.6-2,1.2.6-1,1.2.6-0- depends datacache:
>=1.1.4- depends gtfparse:
>=1.3.0- depends memoized-property:
>=1.0.2- depends numpy:
>=1.7- depends pandas:
>=0.15- depends pylint:
>=1.4.4- depends python:
- depends python-dateutil:
>=2.5.0- depends serializable:
- depends six:
>=1.9.0- depends tinytimer:
- depends typechecks:
>=0.0.2- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install pyensembl and update with:: mamba update pyensembl
To create a new environment, run:
mamba create --name myenvname pyensembl
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/pyensembl:<tag> (see `pyensembl/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/pyensembl/README.html)
