recipe pyensembl

Python interface to ensembl reference genome metadata

Homepage:

https://github.com/openvax/pyensembl

License:

Apache / Apache-2.0

Recipe:

/pyensembl/meta.yaml

package pyensembl

Versions:

2.1.0-0,  2.0.1-0,  2.0.0-0,  1.9.4-0,  1.9.2-0,  1.9.1-0,  1.9.0-0,  1.8.8-0,  1.8.7-1, 

2.1.0-0,  2.0.1-0,  2.0.0-0,  1.9.4-0,  1.9.2-0,  1.9.1-0,  1.9.0-0,  1.8.8-0,  1.8.7-1,  1.8.7-0,  1.8.5-0,  1.8.4-1,  1.8.4-0,  1.8.3-0,  1.8.2-0,  1.8.0-0,  1.7.5-0,  1.7.4-0,  1.7.3-1,  1.7.3-0,  1.7.2-0,  1.2.6-2,  1.2.6-1,  1.2.6-0

Depends:

• datacache >=0.4.19

• gtfparse >=0.0.3

• memoized-property >=1.0.2

• numpy >=1.7

• pandas >=0.15

• pylint >=1.4.4

• python

• python-dateutil >=2.5.0

• serializable

• six >=1.9.0

• tinytimer

• typechecks >=0.0.2

Required By:

• pbiotools

• xpore

• agfusion

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pyensembl

and update with:

conda update pyensembl

or use the docker container:

docker pull quay.io/biocontainers/pyensembl:<tag>

(see pyensembl/tags for valid values for <tag>)

Download stats

Link to this page

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