recipe pygenometracks

Standalone program and library to plot beautiful genome browser tracks.

Homepage

https://github.com/deeptools/pyGenomeTracks/

License

GPL3

Recipe

/pygenometracks/meta.yaml

package pygenometracks

Versions

3.6-0,  3.5.1-0,  3.5-1,  3.5-0,  3.4-0,  3.3-1,  3.3-0,  3.2.1-0,  3.2-0, 

3.6-0,  3.5.1-0,  3.5-1,  3.5-0,  3.4-0,  3.3-1,  3.3-0,  3.2.1-0,  3.2-0,  3.1.2-1,  3.1.2-0,  3.1.1-0,  3.1-0,  3.0-0,  2.1-2,  2.1-1,  2.1-0,  2.0-2,  2.0-1,  2.0-0,  1.0-0,  0.1-0

Depends

• future >=0.17.0

• gffutils >=0.9

• hicmatrix >=15

• intervaltree >=2.1.0

• matplotlib-base >=3.1.1,<=3.3.2

• numpy >=1.16

• pybedtools >=0.8.1

• pybigwig >=0.3.16

• pysam >=0.14

• python >=3.6

• tqdm >=4.20

Required By

• hicexplorer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pygenometracks

and update with:

conda update pygenometracks

or use the docker container:

docker pull quay.io/biocontainers/pygenometracks:<tag>

(see pygenometracks/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pygenometracks/README.html)