- recipe pyhoward
HOWARD - Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery
- Homepage:
- License:
AGPL-3.0-only
- Recipe:
- package pyhoward¶
- versions:
0.13.0-0- depends beautifulsoup4:
>=4.12.0,<4.13.dev0- depends bio:
>=1.7.0,<1.8.dev0- depends coloredlogs:
>=15.0.0,<15.1.dev0- depends coverage:
>=7.5.0,<7.6.dev0- depends cyvcf2:
>=0.31.0,<0.32.dev0- depends dask-core:
>=2023.12.0,<2023.13.dev0- depends fastparquet:
>=2024.5.0,<2024.6.dev0- depends flake8:
>=7.1.0,<7.2.dev0- depends genomepy:
>=0.16.0,<0.17.dev0- depends htslib:
1.22.*- depends jproperties:
>=2.1.0,<2.2.dev0- depends lazy:
>=1.6.0,<1.7.dev0- depends markdown:
>=3.6.0,<3.7.dev0- depends markdown2:
>=2.5.0,<2.6.dev0- depends md-toc:
>=9.0.0,<9.1.dev0- depends mgzip:
>=0.2.0,<0.3.dev0- depends numpy:
>=1.26.0,<1.27.dev0- depends pandas:
>=2.2.0,<2.3.dev0- depends pgzip:
>=0.3.0,<0.4.dev0- depends polars:
>=0.20.0,<0.21.dev0- depends psutil:
>=6.0.0,<6.1.dev0- depends py-bgzip:
>=0.4.0,<0.5.dev0- depends pyarrow:
>=16.1.0,<16.2.dev0- depends pybigwig:
>=0.3.0,<0.4.dev0- depends pyfaidx:
>=0.8.0,<0.9.dev0- depends pyfiglet:
>=1.0.0,<1.1.dev0- depends pynose:
>=1.5.0,<1.6.dev0- depends pypandoc:
>=1.14.0,<1.15.dev0- depends pysam:
>=0.22.0,<0.23.dev0- depends pytest:
>=8.2.0,<8.3.dev0- depends python:
>=3.10,<3.11- depends python-duckdb:
>=1.0.0,<1.1.dev0- depends pyvcf3:
>=1.0.0,<1.1.dev0- depends tabulate:
>=0.9.0,<0.10.dev0- depends termcolor:
>=2.5.0,<2.6.dev0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install pyhoward and update with:: mamba update pyhoward
To create a new environment, run:
mamba create --name myenvname pyhoward
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/pyhoward:<tag> (see `pyhoward/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/pyhoward/README.html)
