- recipe pymlst
python Mlst Local Search Tool
- Homepage:
- License:
GPL3 / GNU General Public v3 (GPLv3)
- Recipe:
- package pymlst¶
- versions:
2.1.6-0,2.1.5-0,2.1.4-0,2.1.3-1,2.1.3-0,2.1.2-0- depends alembic:
>=1.6- depends beautifulsoup4:
>=4.9- depends biopython:
>=1.78- depends click:
>=7.1- depends decorator:
>=4.4- depends kma:
>=1.3- depends mafft:
>=7.3- depends networkx:
>=2.5- depends numpy:
>=1.20- depends pandas:
>=1.2- depends pytest:
>=6.2- depends python:
>=3.7- depends questionary:
>=1.9- depends requests:
>=2.23- depends setuptools:
>=44.0- depends sqlalchemy:
>=1.4,<2- depends ucsc-blat:
>=360- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install pymlst and update with:: mamba update pymlst
To create a new environment, run:
mamba create --name myenvname pymlst
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/pymlst:<tag> (see `pymlst/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/pymlst/README.html)
