recipe pynteny

Multiple HMM - search via synteny structures in Python

Homepage:

http://github.com/robaina/Pynteny

Documentation:

https://robaina.github.io/Pynteny/

License:

Apache-2.0 license

Recipe:

/pynteny/meta.yaml

Links:

DOI: 10.5281/zenodo.7082448

Multiple HMM - search via synteny structures in Python

package pynteny

Versions:

1.0.0-0,  0.0.5-0

Depends:

• biopython

• hmmer

• libgcc-ng >=12

• numpy

• pandas

• prodigal

• psutil

• pyfastx >=0.8

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• requests

• seqkit

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pynteny

and update with:

conda update pynteny

or use the docker container:

docker pull quay.io/biocontainers/pynteny:<tag>

(see pynteny/tags for valid values for <tag>)

Download stats

Link to this page

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