recipe pyroe

A python toolkit to aid with scRNA-seq analysis workflows using alevin-fry

Homepage:

https://github.com/COMBINE-lab/pyroe

License:

BSD-3-Clause

Recipe:

/pyroe/meta.yaml

package pyroe

Versions:

0.9.2-1,  0.9.2-0,  0.9.1-1,  0.9.1-0,  0.9.0-0,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-0, 

0.9.2-1,  0.9.2-0,  0.9.1-1,  0.9.1-0,  0.9.0-0,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.0-0

Depends:

• bedtools >=2.30.0

• biopython >=1.77

• numpy 1.23

• packaging >=21.0

• pandas >=1.3.0,<2.0.0

• pyranges 0.0.120

• python >=3.7

• scanpy >=1.8.2

Required By:

• simpleaf

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pyroe

and update with:

conda update pyroe

or use the docker container:

docker pull quay.io/biocontainers/pyroe:<tag>

(see pyroe/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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