recipe pysamstats

Calculate read mapping stats from SAM/BAM/CRAM

Homepage

https://github.com/alimanfoo/pysamstats

License

MIT

Recipe

/pysamstats/meta.yaml

Links

biotools: pysamstats

package pysamstats

(downloads) docker_pysamstats

Versions

1.1.2-4, 1.1.2-3, 1.1.2-2, 1.1.2-1, 1.1.2-0, 1.0.1-2, 1.0.1-1, 1.0.1-0, 1.0.0-0, 0.24.3-0, 0.24.2-1, 0.24.0-0

Depends libgcc-ng

>=7.3.0

Depends numpy

Depends pysam

>=0.15.2,<0.15.3.0a0

Depends pytables

Depends python

>=2.7,<2.8.0a0

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pysamstats

and update with:

conda update pysamstats

or use the docker container:

docker pull quay.io/biocontainers/pysamstats:<tag>

(see pysamstats/tags for valid values for <tag>)