pysamstats

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A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.

Home https://github.com/alimanfoo/pysamstats
Versions 0.24.0, 0.24.2, 0.24.3
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pysamstats

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pysamstats

and update with:

conda update pysamstats

docker

A Docker container is available at https://quay.io/repository/biocontainers/pysamstats.