recipe python-edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Homepage:

https://github.com/Martinsos/edlib

License:

MIT / MIT License

Recipe:

/python-edlib/meta.yaml

package python-edlib

Versions:

1.3.9-3,  1.3.9-2,  1.3.9-1,  1.3.9-0,  1.3.8.post2-1,  1.3.8.post2-0,  1.3.8.post1-2,  1.3.8.post1-1,  1.3.8.post1-0, 

1.3.9-3,  1.3.9-2,  1.3.9-1,  1.3.9-0,  1.3.8.post2-1,  1.3.8.post2-0,  1.3.8.post1-2,  1.3.8.post1-1,  1.3.8.post1-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.2.4.post1-0,  1.2.4-0,  1.2.3.post1-0,  1.2.3-1,  1.2.3-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

Required By:

• pychopper

• stringdecomposer

• medaka

• hormon

• circle-map

• ultra_bioinformatics

• pb-falcon

• trycycler

• amptk

• isoncorrect

• truvari

• longqc

• duplex-tools

• panaroo

• dysgu

• sctagger

• ggcaller

• crispector

• minipolish

• svim-asm

• pgx-variant-tools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install python-edlib

and update with:

conda update python-edlib

or use the docker container:

docker pull quay.io/biocontainers/python-edlib:<tag>

(see python-edlib/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/python-edlib/README.html)