recipe pyvolve

Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution.

Homepage:

https://github.com/sjspielman/pyvolve

Documentation:

https://sjspielman.github.io/pyvolve

License:

BSD / BSD-2-Clause

Recipe:

/pyvolve/meta.yaml

package pyvolve

(downloads) docker_pyvolve

versions:

1.1.0-0,  0.9.0-0,  0.8.9-0,  0.8.8-2,  0.8.8-0,  0.8.7-0

depends biopython:

depends numpy:

>=1.20.0

depends python:

>=3

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pyvolve

and update with::

   mamba update pyvolve

To create a new environment, run:

mamba create --name myenvname pyvolve

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pyvolve:<tag>

(see `pyvolve/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyvolve/README.html)