qorts

downloads

The QoRTs software package is a fast, efficient, and portable multifunction toolkit designed to assist in the analysis, quality control, and data management of RNA-Seq datasets.

Home http://hartleys.github.io/QoRTs/
Versions 1.1.8
License Public Domain
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/qorts

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install qorts

and update with:

conda update qorts

Notes

QoRTs is Java program that comes with a custom wrapper shell script. This shell wrapper is called “qorts” and is on $PATH by default. By default “-Xms512m -Xmx1g” is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with “qorts -Xms512m -Xmx1g”

docker

A Docker container is available at https://quay.io/repository/biocontainers/qorts.