The QoRTs software package is a fast, efficient, and portable multifunction toolkit designed to assist in the analysis, quality control, and data management of RNA-Seq datasets.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install qorts
and update with:
conda update qorts
QoRTs is Java program that comes with a custom wrapper shell script. This shell wrapper is called “qorts” and is on $PATH by default. By default “-Xms512m -Xmx1g” is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with “qorts -Xms512m -Xmx1g”
A Docker container is available at https://quay.io/repository/biocontainers/qorts.