recipe qtlseq

QTL-seq: pipeline to identify causative mutations responsible for a phenotype

Homepage

https://github.com/YuSugihara/QTL-seq

License

GPL / GPL-3.0-or-later

Recipe

/qtlseq/meta.yaml

Links

biotools: qtlseq, doi: 10.1111/tpj.12105

package qtlseq

Versions

2.2.3-0,  2.2.2-0,  2.2.0-1,  2.2.0-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.7-0,  2.0.6-0, 

2.2.3-0,  2.2.2-0,  2.2.0-1,  2.2.0-0,  2.1.2-0,  2.1.1-0,  2.1.0-0,  2.0.7-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-0,  2.0.0-0

Depends

• bcftools >=1.7

• bwa

• htslib

• matplotlib-base

• numpy

• pandas

• python >=3.5

• samtools >=1.7

• seaborn

• snpeff

• trimmomatic

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install qtlseq

and update with:

conda update qtlseq

or use the docker container:

docker pull quay.io/biocontainers/qtlseq:<tag>

(see qtlseq/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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