recipe quasitools

Quasitools is a collection of tools for analysing Viral Quasispecies



Apache License, Version 2.0



package quasitools

(downloads) docker_quasitools



depends biopython:

depends bowtie2:

depends click:

depends numpy:

depends pyaavf:

depends pysam:


depends python:

depends samtools:


depends scipy:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install quasitools

and update with::

   mamba update quasitools

To create a new environment, run:

mamba create --name myenvname quasitools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `quasitools/tags`_ for valid values for ``<tag>``)

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