recipe quast

Quality Assessment Tool for Genome Assemblies

Homepage:

http://quast.sourceforge.net/

License:

Custom

Recipe:

/quast/meta.yaml

Links:

biotools: quast, doi: 10.1093/bioinformatics/btt086

package quast

Versions:

5.2.0-3,  5.2.0-2,  5.2.0-1,  5.2.0-0,  5.0.2-7,  5.0.2-6,  5.0.2-5,  5.0.2-4,  5.0.2-3, 

5.2.0-3,  5.2.0-2,  5.2.0-1,  5.2.0-0,  5.0.2-7,  5.0.2-6,  5.0.2-5,  5.0.2-4,  5.0.2-3,  5.0.2-2,  5.0.2-1,  5.0.2-0,  5.0.1-0,  5.0.0-1,  5.0.0-0,  4.6.3-2,  4.6.3-1,  4.6.3-0,  4.6.1-0,  4.5-1,  4.4-1,  4.4-0,  4.3-2,  4.3-1,  4.1-1,  4.1-0,  3.2-1

Depends:

• bedtools

• blast

• bwa

• circos

• glimmerhmm

• joblib

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• matplotlib-base

• minimap2 >=2.10

• openjdk >=8

• perl >=5.32.1,<5.33.0a0 *_perl5

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• simplejson

Required By:

• metawrap-mg

• aquamis

• hapsolo

• asqcan

• saspector

• riboseed

• proksee

• datma

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install quast

and update with:

conda update quast

or use the docker container:

docker pull quay.io/biocontainers/quast:<tag>

(see quast/tags for valid values for <tag>)

Notes

- GeneMark gene prediction software is disabled due to licensing issues

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