recipe r-acidexperiment

Toolkit to extend the functionality of SummarizedExperiment.

Homepage:

https://r.acidgenomics.com/packages/acidexperiment/

Developer docs:

https://github.com/acidgenomics/r-acidexperiment

License:

GPL / AGPL-3.0

Recipe:

/r-acidexperiment/meta.yaml

package r-acidexperiment

Versions:

0.4.7-1,  0.4.7-0,  0.4.5-1,  0.4.5-0,  0.4.4-1,  0.4.4-0,  0.3.0-0,  0.2.2-0,  0.2.1-0, 

0.4.7-1,  0.4.7-0,  0.4.5-1,  0.4.5-0,  0.4.4-1,  0.4.4-0,  0.3.0-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.14-0,  0.1.13-0,  0.1.12-0,  0.1.11-0,  0.1.10-2,  0.1.10-1,  0.1.10-0

Depends:

• bioconductor-biobase >=2.58.0

• bioconductor-biocgenerics >=0.44.0

• bioconductor-biostrings >=2.66.0

• bioconductor-genomeinfodb >=1.34.0

• bioconductor-genomicranges >=1.50.0

• bioconductor-iranges >=2.32.0

• bioconductor-multiassayexperiment >=1.24.0

• bioconductor-s4vectors >=0.36.0

• bioconductor-summarizedexperiment >=1.28.0

• r-acidbase >=0.6.15

• r-acidcli >=0.2.7

• r-acidgenerics >=0.6.7

• r-acidgenomes >=0.5.0

• r-acidplyr >=0.3.10

• r-base >=4.2,<4.3.0a0

• r-goalie >=0.6.9

• r-matrix >=1.5.4

• r-pipette >=0.10.9

• r-scales >=1.2.1

• r-stringi >=1.7.12

• r-syntactic >=0.6.5

Required By:

• r-acidgsea

• r-acidsinglecell

• r-basejump

• r-bcbiobase

• r-bcbiornaseq

• r-acidplots

• r-deseqanalysis

• r-bcbiosinglecell

• r-chromium

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-acidexperiment

and update with:

conda update r-acidexperiment

or use the docker container:

docker pull quay.io/biocontainers/r-acidexperiment:<tag>

(see r-acidexperiment/tags for valid values for <tag>)

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