recipe r-acidexperiment

Toolkit to extend the functionality of SummarizedExperiment.

Homepage:

https://r.acidgenomics.com/packages/acidexperiment/

Developer docs:

https://github.com/acidgenomics/r-acidexperiment

License:

GPL / AGPL-3.0

Recipe:

/r-acidexperiment/meta.yaml

package r-acidexperiment

Versions:

0.3.0-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.14-0,  0.1.13-0,  0.1.12-0,  0.1.11-0,  0.1.10-2, 

0.3.0-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.14-0,  0.1.13-0,  0.1.12-0,  0.1.11-0,  0.1.10-2,  0.1.10-1,  0.1.10-0

Depends:

• bioconductor-biobase

• bioconductor-biocgenerics

• bioconductor-biostrings

• bioconductor-genomeinfodb

• bioconductor-genomicranges

• bioconductor-iranges

• bioconductor-s4vectors

• bioconductor-summarizedexperiment

• r-acidbase >=0.5.0

• r-acidcli >=0.1.8

• r-acidgenerics >=0.6.0

• r-acidgenomes >=0.3.0

• r-acidplyr >=0.2.0

• r-base >=4.1,<4.2.0a0

• r-goalie >=0.6.0

• r-matrix

• r-pipette >=0.8.0

• r-scales

• r-sessioninfo

• r-stringr

• r-syntactic >=0.5.1

Required By:

• r-bcbiornaseq

• r-acidsinglecell

• r-acidgsea

• r-basejump

• r-bcbiobase

• r-bcbiosinglecell

• r-acidplots

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-acidexperiment

and update with:

conda update r-acidexperiment

or use the docker container:

docker pull quay.io/biocontainers/r-acidexperiment:<tag>

(see r-acidexperiment/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-acidexperiment/README.html)