recipe r-acidgenomes

Toolkit for downloading and processing genome annotations.

Homepage:

https://r.acidgenomics.com/packages/acidgenomes/

Developer docs:

https://github.com/acidgenomics/r-acidgenomes

License:

GPL / AGPL-3.0

Recipe:

/r-acidgenomes/meta.yaml

package r-acidgenomes

Versions:

0.4.8-1,  0.4.8-0,  0.4.7-0,  0.4.6-0,  0.4.5-0,  0.4.4-1,  0.4.4-0,  0.3.0-0,  0.2.20-0, 

0.4.8-1,  0.4.8-0,  0.4.7-0,  0.4.6-0,  0.4.5-0,  0.4.4-1,  0.4.4-0,  0.3.0-0,  0.2.20-0,  0.2.19-0,  0.2.18-0,  0.2.17-0,  0.2.16-0,  0.2.15-0,  0.2.14-0,  0.2.13-0,  0.2.12-2,  0.2.12-1,  0.2.12-0,  0.2.11-2,  0.2.11-0,  0.1.1-1,  0.1.1-0

Depends:

• bioconductor-annotationdbi >=1.60.0

• bioconductor-annotationhub >=3.6.0

• bioconductor-biocgenerics >=0.44.0

• bioconductor-biomart >=2.54.0

• bioconductor-ensembldb >=2.22.0

• bioconductor-genomeinfodb >=1.34.0

• bioconductor-genomicfeatures >=1.50.0

• bioconductor-genomicranges >=1.50.0

• bioconductor-iranges >=2.32.0

• bioconductor-s4vectors >=0.36.0

• r-acidbase >=0.6.12

• r-acidcli >=0.2.7

• r-acidgenerics >=0.6.6

• r-acidplyr >=0.3.6

• r-base >=4.2,<4.3.0a0

• r-goalie >=0.6.8

• r-pipette >=0.10.3

• r-rcurl >=1.98

• r-rvest >=1.0.3

• r-stringi >=1.7.12

• r-syntactic >=0.6.4

• r-withr >=2.5.0

Required By:

• r-basejump

• r-bcbiornaseq

• r-chromium

• r-acidplots

• r-acidexperiment

• r-acidgsea

• r-bcbiosinglecell

• r-acidsinglecell

• r-deseqanalysis

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-acidgenomes

and update with:

conda update r-acidgenomes

or use the docker container:

docker pull quay.io/biocontainers/r-acidgenomes:<tag>

(see r-acidgenomes/tags for valid values for <tag>)

Download stats

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