recipe r-acidgsea

Parameterized fast gene set enrichment analysis.

Homepage:

https://r.acidgenomics.com/packages/acidgsea/

Developer docs:

https://github.com/acidgenomics/r-acidgsea

License:

GPL / AGPL-3.0

Recipe:

/r-acidgsea/meta.yaml

package r-acidgsea

Versions:

0.8.8-1,  0.8.8-0,  0.8.7-1,  0.8.7-0,  0.8.6-1,  0.8.6-0,  0.7.0-1,  0.7.0-0,  0.6.4-1, 

0.8.8-1,  0.8.8-0,  0.8.7-1,  0.8.7-0,  0.8.6-1,  0.8.6-0,  0.7.0-1,  0.7.0-0,  0.6.4-1,  0.6.4-0

Depends:

• bioconductor-biocgenerics >=0.44.0

• bioconductor-biocparallel >=1.32.0

• bioconductor-fgsea >=1.24.0

• bioconductor-genomeinfodb >=1.34.0

• bioconductor-iranges >=2.32.0

• bioconductor-s4vectors >=0.36.0

• bioconductor-summarizedexperiment >=1.28.0

• r-acidbase >=0.6.15

• r-acidcli >=0.2.7

• r-acidexperiment >=0.4.7

• r-acidgenerics >=0.6.7

• r-acidgenomes >=0.5.0

• r-acidmarkdown >=0.2.5

• r-acidplots >=0.5.5

• r-acidplyr >=0.3.10

• r-base >=4.2,<4.3.0a0

• r-basejump >=0.16.5

• r-deseqanalysis >=0.6.8

• r-ggplot2 >=3.4.2

• r-goalie >=0.6.9

• r-knitr >=1.42

• r-pipette >=0.10.9

• r-rmarkdown >=2.17

• r-syntactic >=0.6.5

Required By:

• r-bcbiornaseq

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-acidgsea

and update with:

conda update r-acidgsea

or use the docker container:

docker pull quay.io/biocontainers/r-acidgsea:<tag>

(see r-acidgsea/tags for valid values for <tag>)

Download stats

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