- recipe r-alakazam
Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.
- Homepage:
- License:
AGPL / AGPL-3
- Recipe:
- package r-alakazam¶
-
- Versions:
1.2.1-1
,1.2.1-0
,1.2.0-1
,1.2.0-0
,0.2.10-0
,0.2.8-0
,0.2.7-0
- Depends:
bioconductor-biostrings
>=2.56.0
bioconductor-genomicalignments
>=1.24.0
bioconductor-iranges
>=2.22.2
libgcc-ng
>=12
libstdcxx-ng
>=12
r-airr
>=1.3
r-base
>=4.2,<4.3.0a0
r-dplyr
>=1.0
r-ggplot2
>=3.3.4
r-igraph
>=1.0.0
r-rcpp
>=0.12.12
r-tidyr
>=1.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-alakazam
and update with:
conda update r-alakazam
or use the docker container:
docker pull quay.io/biocontainers/r-alakazam:<tag>
(see r-alakazam/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-alakazam/README.html)