recipe r-alakazam

Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.

Homepage:

http://alakazam.readthedocs.org

License:

AGPL / AGPL-3

Recipe:

/r-alakazam/meta.yaml

package r-alakazam

(downloads) docker_r-alakazam

Versions:

1.2.0-11.2.0-00.2.10-00.2.8-00.2.7-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-alakazam

and update with:

conda update r-alakazam

or use the docker container:

docker pull quay.io/biocontainers/r-alakazam:<tag>

(see r-alakazam/tags for valid values for <tag>)

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